Evaluation of SYBR Green Based Real-Time Polymerase Chain Reaction (qPCR) in Detection of Reovirus


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Authors

  • Faizul Fikri Mohd Yusop Veterinary Research Institute, Department of Veterinary Services, 59 Jalan Sultan Azlan Shah, 31400 Ipoh, Perak, Malaysia.
  • Syamsiah Aini Ahmad Shohaimi Veterinary Research Institute, Department of Veterinary Services, 59 Jalan Sultan Azlan Shah, 31400 Ipoh, Perak, Malaysia.
  • Leow Bee Leng Veterinary Research Institute, Department of Veterinary Services, 59 Jalan Sultan Azlan Shah, 31400 Ipoh, Perak, Malaysia.
  • Redzwan Sidik Veterinary Research Institute, Department of Veterinary Services, 59 Jalan Sultan Azlan Shah, 31400 Ipoh, Perak, Malaysia.

DOI:

https://doi.org/10.33102/mjosht.v9i2.353

Keywords:

Reovirus, real time RT-PCR, BRYT Green

Abstract

Avian reovirus (ARV) belongs to the Orthoreovirus genus and Reoviridae family and contains icosahedral symmetry with a double-shelled arrangement of surface protein. Avian reoviruses infection can often be seen in a broad range of avian species, including chickens, ducks, pigeons, and turkeys. These viruses can cause tenosynovitis, causing acute lameness due to swelling of one or both hock joints, and can be associated with malabsorption, hepatitis, myocarditis, respiratory disease, and enteritis. This study objective was to use the BRYT Green® based real-time RT-PCR assay in targeting the S4 segment gene for the detection of AVR, thus improving the efficiency and cost of the diagnosis. Thirty-one (n=31), including known ARV-positive samples consisting of pool organs, liver, tendon, and allantoic fluid, were selected to be tested using BRYT Green®-based real-time RT-PCR. The finding of this study showed the one-step BRYT Green®-based RT-qPCR protocol for the detection of the Reovirus S4 genome segment is a success and has advantages compared with conventional RT-PCR. This assay is time-efficient, cost-effective, user-friendly, sensitive, and highly specific. There is no doubt that this protocol can be used in many laboratory diagnoses for avian reovirus infection.

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References

Taber, R., V. Alexander, and W. Whitford. "Persistent Reovirus Infection of CHO Cells Resulting in Virus Resistance." Journal of Virology 17, no. 2 (1976): 513-524.

Liu, H.J., and J.J. Giambrone. "Characterisation of a Non-Radioactive Cloned cDNA Probe for Detecting Avian Reoviruses." Avian Diseases 41 (1996): 374-378.

Ponchel, F., C. Toomes, K. Bransfield, F.T. Leong, S.H. Douglas, L. Bell, V. Combaret, A. Puisieux, A.J. Mighell, P.A. Robinson, C.F. Inglehearn, A.F. Markham, et al. "Real-Time PCR Based on SYBR-Green I Fluorescence: An Alternative to the TaqMan Assay for a Relative Quantification of Gene Rearrangements, Gene Amplification and Micro Gene Deletions." BMC Biotechnology 3, no. 18 (2003). https://doi.org/ 10.1186/1472-6750-3-18.

Jones, R.C., and O. Onunkwo. "Studies on Experimental Tenosynovitis in Light Hybrid Chickens." Avian Pathology 7 (1978): 171-181.

Rey, M.E., E. D’Andrea, J. Calvert-Evers, M. Paximadis, and G. Boccardo. "Evidence of a Phytoreovirus Associated with Tobacco Exhibiting Leaf Curl Symptoms in South Africa." Phytopathology 89, no. 4 (1999): 303-307. https://doi.org/10.1094/PHYTO.1999.89.4.303.

Xie, Z.X., A.A. Fadl, T. Girschick, and M.I. Khan. "Amplification of Avian Reovirus RNA Using the Reverse Transcriptase-Polymerase Chain Reaction." Avian Diseases 41 (1997): 654-660.

Fabre, A., M. Colotte, A. Luis, S. Tuffet, and J. Bonnet. "An Efficient Method for Long-Term Room Temperature Storage of RNA." European Journal of Human Genetics 22, no. 3 (2014): 379-385. https://doi.org/10.1038/ejhg.2013.145.

Van der Heide, L., and M. Kalbac. "Infectious Tenosynovitis (Viral Arthritis): Characterisation of a Connecticut Virus Isolate as a Reovirus and Evidence of Viral Egg Transmission by Reovirus-Infected Broiler Breeders." Avian Diseases 19 (1975): 683-688.

Zhang, Q., J. Wang, F. Deng, Z. Yan, Y. Xia, Z. Wang, J. Ye, Y. Deng, Z. Zhang, M. Qiao, R. Li, S.K. Denduluri, Q. Wei, L. Zhao, S. Lu, X. Wang, S. Tang, H. Liu, H.H. Luu, R.C. Haydon, T.C. He, and L. Jiang. "TqPCR: A Touchdown qPCR Assay with Significantly Improved Detection Sensitivity and Amplification Efficiency of SYBR Green qPCR." PLoS One 10, no. 7 (2015): e0132666. https://doi.org/10.1371/journal.pone.0132666.

Mackay, I.M. "Real-Time PCR in the Microbiology Laboratory." Clinical Microbiology and Infection 10, no. 3 (2004): 190-212. https://doi.org/10.1111/j.1198-743x.2004.00722.x.

Acevedo, A.M., C.L. Perera, A. Vega, L. Rios, L. Coronado, D. Relova, M.T. Frias, L. Ganges, J.I. Nunez, and L.J. Perez. "A Duplex SYBR Green I-Based Real-Time RT-PCR Assay for the Simultaneous Detection and Differentiation of Massachusetts and Non-Massachusetts Serotypes of Infectious Bronchitis Virus." Molecular Cell Probes 27, no. 5-6 (2013): 184-192. https://doi.org/10.1016/j.mcp.2013.06.001.

Cavanagh, D., and J. Gelb. Diseases of Poultry, 12th ed. Ames: Blackwell Publishing Professional, Hoboken, New Jersey, 2008.

Jones, R.C. "Avian Reovirus Infections." Scientific and Technical Review of the Office International des Epizooties (Paris) 19, no. 2 (2000): 614-625.

Al-Afaleq, A.I., and R.C. Jones. "Localisation of Avian Reovirus in the Hock Joints of Chicks after Entry through Broken Skin." Research in Veterinary Science 48 (1990): 381-382.

McFerran, J.B., T.J. Conner, and R.M. McCracken. "Isolation of Adenoviruses and Reoviruses from Avian Species Other than Domestic Fowl." Avian Diseases 20 (1976): 519-524.

Menendez, N.A., B.W. Calnek, and B.S. Cowen. "Experimental Egg-Transmission of Avian Reovirus." Avian Diseases 19 (1975): 104-111.

Aldea, C., C.P. Alvarez, L. Folgueira, R. Delgado, and J.R. Otero. "Rapid Detection of Herpes Simplex Virus DNA in Genital Ulcers by Real-Time PCR Using SYBR Green I Dye as the Detection Signal." Journal of Clinical Microbiology 40, no. 3 (2002): 1060-1062. https://doi.org/10.1128/jcm.40.3.1060-1062.2002.

Palya, V., R. Glavits, M. Dobos-Kovacs, E. Ivanics, E. Nagy, K. Banyai, G. Reuter, G. Szucs, A. Dan, and M. Benko. "Reovirus Identified as Cause of Disease in Young Geese." Avian Pathology: Journal of the WVPA 32, no. 2 (2003): 129-138. https://doi.org/10.1080/030794502100007187.

Lu, H., Y. Tang, P.A. Dunn, E.A. Wallner-Pendleton, L. Lin, and E.A. Knoll. "Isolation and Molecular Characterization of Newly Emerging Avian Reovirus Variants and Novel Strains in Pennsylvania, USA, 2011-2014." Scientific Reports 5 (2015): 14727. https://doi.org/10.1038/srep14727.

Liu, H.J., J.H. Chen, M.H. Liao, M. Lin, and G.N. Chang. "Identification of the Sigma C-Encoded Gene of Avian Reovirus by Nested PCR and Restriction Endonuclease Analysis." The Journal of Virological Methods 82 (1999): 83-90.

Guo, K., T. Dormitorio, S. Ou, and J. Giambrone. "Detection and Differentiation of Avian Reoviruses Using SYBR-Green I-Based Two-Step Real-Time Reverse Transcription PCR with Melting Curve Analysis." Avian Diseases 56, no. 2 (2012): 369-376. https://doi.org/10.1637/9692-022211-Reg.1.

Fellahi, S., M.E. Harrak, J.H. Kuhn, G. Sebbar, E.A. Bouaiti, K. Khataby, O.F. Fihri, M.E. Houadfi, and M.M. Ennaji. "Comparison of SYBR Green I Real-Time RT-PCR with Conventional Agarose Gel-Based RT-PCR for the Diagnosis of Infectious Bronchitis Virus Infection in Chickens in Morocco." BMC Research Notes 9 (2016): 231. https://doi.org/s13104-016-2037-z.

De Gussem, J., H. Swam, K. Lievens, and P. De Herdt. "Reovirus Tenosynovitis in a Flock of Layer Breeders." Avian Pathology: Journal of the WVPA (2010). https://doi.org/10.1080/03079451003717597.

Page, R.K., O.J. Fletcher, G.N. Rowlad, D. Gaudry, and P. Villegas. "Malabsorption Syndrome in Broiler Chickens." Avian Dis. 26 (1982): 618-624.

Damsteegt, E.L., N. McHugh, and P.M. Lokman. "Storage by Lyophilization – Resulting RNA Quality Is Tissue Dependent." Analytical Biochemistry 511 (2016): 92-96. https://doi.org/10.1016/j.ab.2016.08.005.

Al-Murfarrej, S.I., C.E. Savage, and R.C. Jones. "Egg Transmission of Avian Reoviruses in Chickens: Comparison of a Trypsin-Sensitive and a Trypsin-Resistant Strain." Avian Pathology 25, no. 3 (1996): 469-480.

Guneratne, J.R.M., R.C. Jones, and K. Georgiou. "Some Observations on the Isolation and Cultivation of Avian Reoviruses." Avian Pathology 11 (1982): 453-462.

Ide, P.R., and W. Dewitt. "Serological Incidence of Avian Reovirus Infection in Broiler-Breeders and Progeny in Nova Scotia." The Canadian Veterinary Journal 20, no. 12 (1979): 348-353.

McNulty, M.S. Reovirus in Virus Infections in Birds. Elsevier Science Publishers BV, Amsterdam, 1993.

Takase, K., F. Nonaka, M. Yamamoto, and S. Yamada. "Serological and Pathogenetic Studies on Avian Reoviruses Isolated in Japan." Avian Diseases 31 (1987): 464-469.

Published

2023-09-12
CITATION
DOI: 10.33102/mjosht.v9i2.353
Published: 2023-09-12

How to Cite

Faizul Fikri Mohd Yusop, Syamsiah Aini Ahmad Shohaimi, Leow Bee Leng, & Redzwan Sidik. (2023). Evaluation of SYBR Green Based Real-Time Polymerase Chain Reaction (qPCR) in Detection of Reovirus. Malaysian Journal of Science Health & Technology, 9(2), 98–105. https://doi.org/10.33102/mjosht.v9i2.353

Issue

Section

Veterinary